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2018
  1. Ackerman, DS, Altun, B, Kolodieznyi, D, Bruchez, MP, Tsourkas, A, Jarvik, JW. Antibody-Linked Fluorogen-Activating Proteins for Antigen Detection and Cell Ablation. Bioconjug Chem. 2019; 30 (1):63-69. PubMed PMID:30543409.
  2. Shelke, SA, Shao, Y, Laski, A, Koirala, D, Weissman, BP, Fuller, JR, Tan, X, Constantin, TP, Waggoner, AS, Bruchez, MP, Armitage, BA, Piccirilli, JA. Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif. Nat Commun. 2018; 9 (1):4542. PubMed PMID:30382099.
  3. Tan, X, Bruchez, MP, Armitage, BA. Closing the Loop: Constraining TAT Peptide by γPNA Hairpin for Enhanced Cellular Delivery of Biomolecules. Bioconjug Chem. 2018; 29 (9):2892-2898. PubMed PMID:30130094.
  4. Zeng, G, Wang, Y, Bruchez, MP, Liang, FS. Self-Reporting Chemically Induced Protein Proximity System Based on a Malachite Green Derivative and the L5** Fluorogen Activating Protein. Bioconjug Chem. 2018; 29 (9):3010-3015. PubMed PMID:30016083.
  5. Hager, NA, Krasowski, CJ, Mackie, TD, Kolb, AR, Needham, PG, Augustine, AA, Dempsey, A, Szent-Gyorgyi, C, Bruchez, MP, Bain, DJ, Kwiatkowski, AV, O'Donnell, AF, Brodsky, JL. Select α-arrestins control cell-surface abundance of the mammalian Kir2.1 potassium channel in a yeast model. J Biol Chem. 2018; 293 (28):11006-11021. PubMed PMID:29784874.
  6. Lin, Y, Schmidt, BF, Bruchez, MP, McManus, CJ. Structural analyses of NEAT1 lncRNAs suggest long-range RNA interactions that may contribute to paraspeckle architecture. Nucleic Acids Res. 2018; 46 (7):3742-3752. PubMed PMID:29394378.
  7. Perkins, LA, Fisher, GW, Naganbabu, M, Schmidt, BF, Mun, F, Bruchez, MP. High-Content Surface and Total Expression siRNA Kinase Library Screen with VX-809 Treatment Reveals Kinase Targets that Enhance F508del-CFTR Rescue. Mol Pharm. 2018; 15 (3):759-767. PubMed PMID:29384380.
  8. Bruchez, MP. Through, rather than across. Nat Mater. 2018; 17 (2):112-113. PubMed PMID:31745265.
  9. Bruchez, MP. DNA nanostructures: Through, rather than across. Nat Mater. 2018; 17 (2):112-113. PubMed PMID:29358770.
  10. Perkins, LA, Yan, Q, Schmidt, BF, Kolodieznyi, D, Saurabh, S, Larsen, MB, Watkins, SC, Kremer, L, Bruchez, MP. Genetically Targeted Ratiometric and Activated pH Indicator Complexes (TRApHIC) for Receptor Trafficking. Biochemistry. 2018; 57 (5):861-871. PubMed PMID:29283245.
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2017
  1. Larsen, MB, Perez Verdaguer, M, Schmidt, BF, Bruchez, MP, Watkins, SC, Sorkin, A. Generation of endogenous pH-sensitive EGF receptor and its application in high-throughput screening for proteins involved in clathrin-mediated endocytosis. Elife. 2019; 8 :. PubMed PMID:31066673.
  2. Pratt, CP, Kuljis, DA, Homanics, GE, He, J, Kolodieznyi, D, Dudem, S, Hollywood, MA, Barth, AL, Bruchez, MP. Tagging of Endogenous BK Channels with a Fluorogen-Activating Peptide Reveals β4-Mediated Control of Channel Clustering in Cerebellum. Front Cell Neurosci. 2017; 11 :337. PubMed PMID:29163049.
  3. Lorenz-Guertin, JM, Wilcox, MR, Zhang, M, Larsen, MB, Pilli, J, Schmidt, BF, Bruchez, MP, Johnson, JW, Waggoner, AS, Watkins, SC, Jacob, TC. A versatile optical tool for studying synaptic GABAA receptor trafficking. J Cell Sci. 2017; 130 (22):3933-3945. PubMed PMID:29025969.
  4. Tan, X, Constantin, TP, Sloane, KL, Waggoner, AS, Bruchez, MP, Armitage, BA. Fluoromodules Consisting of a Promiscuous RNA Aptamer and Red or Blue Fluorogenic Cyanine Dyes: Selection, Characterization, and Bioimaging. J Am Chem Soc. 2017; 139 (26):9001-9009. PubMed PMID:28644615.
  5. Shiwarski, DJ, Darr, M, Telmer, CA, Bruchez, MP, Puthenveedu, MA. PI3K class II α regulates δ-opioid receptor export from the trans-Golgi network. Mol Biol Cell. 2017; 28 (16):2202-2219. PubMed PMID:28566554.
  6. Wang, Y, Ballou, B, Schmidt, BF, Andreko, S, St Croix, CM, Watkins, SC, Bruchez, MP. Affibody-targeted fluorogen activating protein for in vivo tumor imaging. Chem Commun (Camb). 2017; 53 (12):2001-2004. PubMed PMID:28120951.
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2016
  1. Naganbabu, M, Perkins, LA, Wang, Y, Kurish, J, Schmidt, BF, Bruchez, MP. Multiexcitation Fluorogenic Labeling of Surface, Intracellular, and Total Protein Pools in Living Cells. Bioconjug Chem. 2016; 27 (6):1525-31. PubMed PMID:27159569.
  2. Oyaghire, SN, Cherubim, CJ, Telmer, CA, Martinez, JA, Bruchez, MP, Armitage, BA. RNA G-Quadruplex Invasion and Translation Inhibition by Antisense γ-Peptide Nucleic Acid Oligomers. Biochemistry. 2016; 55 (13):1977-88. PubMed PMID:26959335.
  3. He, J, Wang, Y, Missinato, MA, Onuoha, E, Perkins, LA, Watkins, SC, St Croix, CM, Tsang, M, Bruchez, MP. A genetically targetable near-infrared photosensitizer. Nat Methods. 2016; 13 (3):263-8. PubMed PMID:26808669.
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2015
  1. Zhang, M, Chakraborty, SK, Sampath, P, Rojas, JJ, Hou, W, Saurabh, S, Thorne, SH, Bruchez, MP, Waggoner, AS. Fluoromodule-based reporter/probes designed for in vivo fluorescence imaging. J Clin Invest. 2015; 125 (10):3915-27. PubMed PMID:26348895.
  2. Saurabh, S, Zhang, M, Mann, VR, Costello, AM, Bruchez, MP. Kinetically Tunable Photostability of Fluorogen-Activating Peptide-Fluorogen Complexes. Chemphyschem. 2015; 16 (14):2974-80. PubMed PMID:26310607.
  3. Pratt, CP, He, J, Wang, Y, Barth, AL, Bruchez, MP. Fluorogenic Green-Inside Red-Outside (GIRO) Labeling Approach Reveals Adenylyl Cyclase-Dependent Control of BKα Surface Expression. Bioconjug Chem. 2015; 26 (9):1963-71. PubMed PMID:26301573.
  4. Canady, TD, Telmer, CA, Oyaghire, SN, Armitage, BA, Bruchez, MP. In Vitro Reversible Translation Control Using γPNA Probes. J Am Chem Soc. 2015; 137 (32):10268-75. PubMed PMID:26241615.
  5. Magenau, AJ, Saurabh, S, Andreko, SK, Telmer, CA, Schmidt, BF, Waggoner, AS, Bruchez, MP. Genetically targeted fluorogenic macromolecules for subcellular imaging and cellular perturbation. Biomaterials. 2015; 66 :1-8. PubMed PMID:26183934.
  6. Bruchez, MP. Dark dyes-bright complexes: fluorogenic protein labeling. Curr Opin Chem Biol. 2015; 27 :18-23. PubMed PMID:26056741.
  7. Yan, Q, Bruchez, MP. Advances in chemical labeling of proteins in living cells. Cell Tissue Res. 2015; 360 (1):179-94. PubMed PMID:25743694.
  8. Telmer, CA, Verma, R, Teng, H, Andreko, S, Law, L, Bruchez, MP. Rapid, specific, no-wash, far-red fluorogen activation in subcellular compartments by targeted fluorogen activating proteins. ACS Chem Biol. 2015; 10 (5):1239-46. PubMed PMID:25650487.
  9. Yan, Q, Schmidt, BF, Perkins, LA, Naganbabu, M, Saurabh, S, Andreko, SK, Bruchez, MP. Near-instant surface-selective fluorogenic protein quantification using sulfonated triarylmethane dyes and fluorogen activating proteins. Org Biomol Chem. 2015; 13 (7):2078-86. PubMed PMID:25520058.
  10. Wang, Y, Telmer, CA, Schmidt, BF, Franke, JD, Ort, S, Arndt-Jovin, DJ, Bruchez, MP. Fluorogen activating protein-affibody probes: modular, no-wash measurement of epidermal growth factor receptors. Bioconjug Chem. 2015; 26 (1):137-44. PubMed PMID:25490520.
  11. Ganesan, V, Schmidt, B, Avula, R, Cooke, D, Maggiacomo, T, Tellin, L, Ascherman, DP, Bruchez, MP, Minden, J. Immuno-proteomics: Development of a novel reagent for separating antibodies from their target proteins. Biochim Biophys Acta. 2015; 1854 (6):592-600. PubMed PMID:25466873.
  12. Schwartz, SL, Yan, Q, Telmer, CA, Lidke, KA, Bruchez, MP, Lidke, DS. Fluorogen-activating proteins provide tunable labeling densities for tracking FcεRI independent of IgE. ACS Chem Biol. 2015; 10 (2):539-46. PubMed PMID:25343439.
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2014
  1. Saurabh, S, Beck, LE, Maji, S, Baty, CJ, Wang, Y, Yan, Q, Watkins, SC, Bruchez, MP. Multiplexed modular genetic targeting of quantum dots. ACS Nano. 2014; 8 (11):11138-46. PubMed PMID:25380615.
  2. Tan, X, Wang, Y, Armitage, BA, Bruchez, MP. Label-free molecular beacons for biomolecular detection. Anal Chem. 2014; 86 (21):10864-9. PubMed PMID:25287123.
  3. Saunders, MJ, Block, E, Sorkin, A, Waggoner, AS, Bruchez, MP. A bifunctional converter: fluorescein quenching scFv/fluorogen activating protein for photostability and improved signal to noise in fluorescence experiments. Bioconjug Chem. 2014; 25 (8):1556-64. PubMed PMID:25072845.
  4. Tan, C, Saurabh, S, Bruchez, MP, Schwartz, R, LeDuc, P. Reply to 'Complexity of molecular crowding in cell-free enzymatic reaction networks'. Nat Nanotechnol. 2014; 9 (6):407-8. PubMed PMID:24894472.
  5. Tan, X, Dey, SK, Telmer, C, Zhang, X, Armitage, BA, Bruchez, MP. Aptamers act as activators for the thrombin mediated-hydrolysis of peptide substrates. Chembiochem. 2014; 15 (2):205-8. PubMed PMID:24339381.
  6. Lan, L, Nakajima, S, Wei, L, Sun, L, Hsieh, CL, Sobol, RW, Bruchez, M, Van Houten, B, Yasui, A, Levine, AS. Novel method for site-specific induction of oxidative DNA damage reveals differences in recruitment of repair proteins to heterochromatin and euchromatin. Nucleic Acids Res. 2014; 42 (4):2330-45. PubMed PMID:24293652.
  7. Yan, Q, Schwartz, SL, Maji, S, Huang, F, Szent-Gyorgyi, C, Lidke, DS, Lidke, KA, Bruchez, MP. Localization microscopy using noncovalent fluorogen activation by genetically encoded fluorogen-activating proteins. Chemphyschem. 2014; 15 (4):687-695. PubMed PMID:24194371.
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2013
  1. Szent-Gyorgyi, C, Stanfield, RL, Andreko, S, Dempsey, A, Ahmed, M, Capek, S, Waggoner, AS, Wilson, IA, Bruchez, MP. Malachite green mediates homodimerization of antibody VL domains to form a fluorescent ternary complex with singular symmetric interfaces. J Mol Biol. 2013; 425 (22):4595-613. PubMed PMID:23978698.
  2. Xu, J, Chang, J, Yan, Q, Dertinger, T, Bruchez, M, Weiss, S. Labeling Cytosolic Targets in Live Cells with Blinking Probes. J Phys Chem Lett. 2013; 4 (13):2138-2146. PubMed PMID:23930154.
  3. Tan, C, Saurabh, S, Bruchez, MP, Schwartz, R, Leduc, P. Molecular crowding shapes gene expression in synthetic cellular nanosystems. Nat Nanotechnol. 2013; 8 (8):602-8. PubMed PMID:23851358.
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2012
  1. Ballou, B, Andreko, SK, Osuna-Highley, E, McRaven, M, Catalone, T, Bruchez, MP, Hope, TJ, Labib, ME. Nanoparticle transport from mouse vagina to adjacent lymph nodes. PLoS One. 2012; 7 (12):e51995. PubMed PMID:23284844.
  2. Yushchenko, DA, Zhang, M, Yan, Q, Waggoner, AS, Bruchez, MP. Genetically targetable and color-switching fluorescent probe. Chembiochem. 2012; 13 (11):1564-8. PubMed PMID:22777954.
  3. Maji, S, Bruchez, MP. Inferring biological structures from super-resolution single molecule images using generative models. PLoS One. 2012; 7 (5):e36973. PubMed PMID:22629348.
  4. Grover, A, Schmidt, BF, Salter, RD, Watkins, SC, Waggoner, AS, Bruchez, MP. Genetically encoded pH sensor for tracking surface proteins through endocytosis. Angew Chem Int Ed Engl. 2012; 51 (20):4838-42. PubMed PMID:22461279.
  5. Saurabh, S, Maji, S, Bruchez, MP. Evaluation of sCMOS cameras for detection and localization of single Cy5 molecules. Opt Express. 2012; 20 (7):7338-49. PubMed PMID:22453414.
  6. Shruti, S, Urban-Ciecko, J, Fitzpatrick, JA, Brenner, R, Bruchez, MP, Barth, AL. The brain-specific Beta4 subunit downregulates BK channel cell surface expression. PLoS One. 2012; 7 (3):e33429. PubMed PMID:22438928.
  7. Saunders, MJ, Szent-Gyorgyi, C, Fisher, GW, Jarvik, JW, Bruchez, MP, Waggoner, AS. Fluorogen activating proteins in flow cytometry for the study of surface molecules and receptors. Methods. 2012; 57 (3):308-17. PubMed PMID:22366230.
  8. Micheva, KD, Bruchez, MP. The gain in brain: novel imaging techniques and multiplexed proteomic imaging of brain tissue ultrastructure. Curr Opin Neurobiol. 2012; 22 (1):94-100. PubMed PMID:21944260.
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2011
  1. Bruchez, MP. Quantum dots find their stride in single molecule tracking. Curr Opin Chem Biol. 2011; 15 (6):775-80. PubMed PMID:22055494.
  2. Mittal, R, Bruchez, MP. Biotin-4-fluorescein based fluorescence quenching assay for determination of biotin binding capacity of streptavidin conjugated quantum dots. Bioconjug Chem. 2011; 22 (3):362-8. PubMed PMID:21314110.
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2010
  1. Bruchez, M. [From loss of autonomy to dysautonomia: anticholinergic drugs in geriatrics]. Rev Med Suisse. 2010; 6 (270):2146-9. PubMed PMID:21174838.
  2. Szent-Gyorgyi, C, Schmidt, BF, Fitzpatrick, JA, Bruchez, MP. Fluorogenic dendrons with multiple donor chromophores as bright genetically targeted and activated probes. J Am Chem Soc. 2010; 132 (32):11103-9. PubMed PMID:20698676.
  3. Fisher, GW, Adler, SA, Fuhrman, MH, Waggoner, AS, Bruchez, MP, Jarvik, JW. Detection and quantification of beta2AR internalization in living cells using FAP-based biosensor technology. J Biomol Screen. 2010; 15 (6):703-9. PubMed PMID:20488980.
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2009
  1. Ballou, B, Ernst, LA, Andreko, S, Fitzpatrick, JA, Lagerholm, BC, Waggoner, AS, Bruchez, MP. Imaging vasculature and lymphatic flow in mice using quantum dots. Methods Mol Biol. 2009; 574 :63-74. PubMed PMID:19685300.
  2. Mittal, R, Bruchez, MP. Calibration of Flow Cytometry for Quantitative Quantum Dot Measurements. Curr Protoc Cytom. 2009; Chapter 6 :Unit6.26. PubMed PMID:20953266.
  3. Fitzpatrick, JA, Andreko, SK, Ernst, LA, Waggoner, AS, Ballou, B, Bruchez, MP. Long-term persistence and spectral blue shifting of quantum dots in vivo. Nano Lett. 2009; 9 (7):2736-41. PubMed PMID:19518087.
  4. Fitzpatrick, JA, Yan, Q, Sieber, JJ, Dyba, M, Schwarz, U, Szent-Gyorgyi, C, Woolford, CA, Berget, PB, Waggoner, AS, Bruchez, MP. STED nanoscopy in living cells using Fluorogen Activating Proteins. Bioconjug Chem. 2009; 20 (10):1843-1847. PubMed PMID:20976031.
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2008
  1. Daneshvar, H, Nelms, J, Muhammad, O, Jackson, H, Tkach, J, Davros, W, Peterson, T, Vogelbaum, MA, Bruchez, MP, Toms, SA. Imaging characteristics of zinc sulfide shell, cadmium telluride core quantum dots. Nanomedicine (Lond). 2008; 3 (1):21-9. PubMed PMID:18393664.
  2. Szent-Gyorgyi, C, Schmidt, BF, Schmidt, BA, Creeger, Y, Fisher, GW, Zakel, KL, Adler, S, Fitzpatrick, JA, Woolford, CA, Yan, Q, Vasilev, KV, Berget, PB, Bruchez, MP, Jarvik, JW, Waggoner, A. Fluorogen-activating single-chain antibodies for imaging cell surface proteins. Nat Biotechnol. 2008; 26 (2):235-40. PubMed PMID:18157118.
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